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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
ATAC-seq
13
single cell RNA-seq
8
ChIP-seq
Assay category
45
DNA accessibility
13
Transcription
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
283
October, 2019
228
August, 2017
199
May, 2022
173
February, 2023
171
May, 2021
158
August, 2021
152
May, 2020
150
February, 2021
120
May, 2019
80
April, 2019
79
November, 2018
74
October, 2018
59
September, 2020
48
December, 2017
47
September, 2018
47
September, 2023
40
May, 2024
39
July, 2019
36
November, 2019
35
December, 2018
31
June, 2019
25
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
15
March, 2020
15
May, 2023
11
November, 2020
9
September, 2017
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
July, 2018
4
October, 2022
1
August, 2022
1
December, 2019
Available data
550
bam
tsv
529
bigWig
89
txt
45
fastq
23
bed narrowPeak
8
tagAlign
6
csv
2
bed bed3
bed bed3+
Organism
150
Homo sapiens
Biosample type
93
tissue
40
primary cell
17
cell line
in vitro differentiated cells
Organ
92
bone element
14
artery
14
blood vessel
14
heart
14
vasculature
8
skeleton
6
limb
2
liver
1
connective tissue
Project
111
AMP
39
HPAP
Genome assembly (visualization)
23
GRCh38
23
hg19
Lab
111
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
files.file_type!
bed bed3+
tsv
organ_slims!
skin of body
BIOSAMPLE
ASSAY
150 results
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RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
tissue
bone element
84
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 5 more…
primary cell
Langerhans cell
27
12
osteoblast
1
cell line
smooth muscle cell of the coronary artery
8
6
iPSC derived cell line
2
HepG2
1
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