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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
4
ATAC-seq
4
WGBS
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
73
DNA binding
6
DNA accessibility
4
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
55
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
November, 2019
1
October, 2017
October, 2019
Available data
441
bam
424
bigWig
401
tsv
43
fastq
12
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
485
Homo sapiens
Biosample type
484
tissue
2
primary cell
in vitro differentiated cells
Organ
864
pancreas
766
liver
581
connective tissue
486
adipose tissue
443
epithelium
376
heart
320
kidney
198
brain
187
vasculature
182
blood vessel
159
bone element
115
artery
92
musculature of body
69
blood
69
bodily fluid
52
limb
39
eye
23
spleen
20
lung
18
ureter
16
skeleton
8
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
486
AMP
Genome assembly (visualization)
424
hg19
421
GRCh38
Lab
486
AMP-T2D consortium
Audit category:
12
missing controlled_by
biosample_type!
in vitro differentiated cells
files.file_type!
bed bedMethyl
month_released!
November, 2019
October, 2019
BIOSAMPLE
ASSAY
486 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
2
1
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
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