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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
9
ChIP-seq
2
single cell RNA-seq
1
ATAC-seq
Assay category
58
Transcription
9
DNA binding
1
DNA accessibility
Target of assay
9
control
Date released
54
February, 2021
6
October, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
May, 2019
Available data
103
bam
86
bigWig
bed narrowPeak
58
tsv
25
bigBed narrowPeak
7
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
68
Homo sapiens
Biosample type
54
cell line
12
tissue
2
primary cell
Organ
731
pancreas
557
connective tissue
477
adipose tissue
367
epithelium
329
liver
201
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
68
AMP
Genome assembly (visualization)
54
GRCh38
54
hg19
Lab
68
AMP-T2D consortium
biosample_type!
in vitro differentiated cells
files.file_type!
bed narrowPeak
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
68 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
cell line
smooth muscle cell of the coronary artery
52
2
tissue
tibial artery
1
5
coronary artery
1
2
pulmonary artery
2
islet of Langerhans
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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