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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
221
ChIP-seq
22
total RNA-seq
18
ATAC-seq
7
DNase-seq
4
pCHi-C
3
Hi-C
1
FAIRE-seq
Assay category
221
DNA binding
26
DNA accessibility
22
Transcription
3
3D chromatin structure
Target of assay
188
histone
188
histone modification
136
narrow histone mark
52
broad histone mark
33
control
Date released
681
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
276
October, 2019
267
May, 2021
200
May, 2022
189
February, 2023
168
July, 2018
147
August, 2021
137
June, 2019
115
May, 2019
97
July, 2019
88
November, 2018
76
October, 2018
73
September, 2018
59
September, 2020
57
April, 2019
56
November, 2019
54
March, 2020
51
December, 2017
49
April, 2018
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
January, 2018
4
March, 2019
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
1
May, 2023
Available data
218
bam
181
bigWig
171
bed narrowPeak
67
bigBed narrowPeak
49
tagAlign
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
8
tsv
2
hic
1
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
276
Homo sapiens
Biosample type
238
tissue
23
primary cell
15
cell line
in vitro differentiated cells
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
35
epithelium
kidney
26
artery
21
eye
21
vein
18
pancreas
8
heart
7
liver
4
gonad
4
ovary
2
connective tissue
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
276
AMP
Genome assembly (visualization)
187
hg19
181
GRCh38
Lab
276
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
files.file_type!
bedpe
organ_slims!
kidney
BIOSAMPLE
ASSAY
276 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
FAIRE-seq
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
brain
5
1
+ See 77 more…
primary cell
endothelial cell of umbilical vein
17
2
1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
cell line
Panc1
13
1
1
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