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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
total RNA-seq
5
RRBS
4
Hi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
9
Transcription
6
DNA methylation
4
3D chromatin structure
2
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
hic
1
txt
Organism
61
Homo sapiens
Biosample type
48
tissue
13
primary cell
Organ
919
pancreas
711
liver
574
connective tissue
488
adipose tissue
466
epithelium
359
heart
275
kidney
248
brain
216
vasculature
214
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
61
musculature of body
57
eye
41
nerve
24
spleen
20
lung
16
skeleton
16
vein
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
38
hg19
20
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
biosample_type!
in vitro differentiated cells
files.file_type!
bigBed broadPeak
hic
month_released!
November, 2020
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
psoas muscle
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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