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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
89
total RNA-seq
9
WGBS
5
ATAC-seq
3
DNase-seq
2
RRBS
1
FAIRE-seq
Assay category
194
DNA binding
89
Transcription
11
DNA methylation
9
DNA accessibility
Target of assay
132
histone modification
131
histone
71
broad histone mark
60
narrow histone mark
39
control
23
transcription factor
2
RNA binding protein
Date released
689
February, 2021
342
November, 2017
May, 2020
303
August, 2017
297
October, 2019
277
August, 2021
267
May, 2021
198
May, 2022
189
February, 2023
168
July, 2018
113
May, 2019
98
July, 2019
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
59
September, 2020
56
November, 2019
51
December, 2017
51
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
21
June, 2019
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
January, 2018
3
June, 2018
1
August, 2022
Available data
231
fastq
228
bam
211
bigWig
89
tsv
86
bed narrowPeak
56
tagAlign
41
bigBed narrowPeak
27
bed broadPeak
26
bed bed3+
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
296
Homo sapiens
Biosample type
258
tissue
in vitro differentiated cells
45
primary cell
Organ
188
pancreas
57
adipose tissue
57
connective tissue
54
liver
29
epithelium
musculature of body
Project
303
AMP
Genome assembly (visualization)
198
hg19
188
GRCh38
Lab
303
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
10
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
files.file_type!
bigBed broadPeak
month_released!
May, 2020
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
303 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
pancreas
14
white adipose tissue
12
+ See 3 more…
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
skeletal muscle myoblast
2
1
1
pancreatic acinar cell
1
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