Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
336
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
3
DNase-seq
1
FAIRE-seq
Assay category
336
DNA binding
89
Transcription
15
DNA methylation
9
DNA accessibility
Target of assay
243
histone modification
242
histone
141
broad histone mark
101
narrow histone mark
65
control
28
transcription factor
7
RNA binding protein
Date released
689
February, 2021
342
November, 2017
341
May, 2020
329
August, 2017
297
October, 2019
277
August, 2021
267
May, 2021
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
348
bam
321
bigWig
233
fastq
196
bed narrowPeak
138
bigBed narrowPeak
89
tsv
71
tagAlign
40
bed broadPeak
26
bed bed3+
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
442
Homo sapiens
Biosample type
399
tissue
in vitro differentiated cells
50
primary cell
Organ
190
pancreas
57
adipose tissue
57
connective tissue
54
liver
50
blood vessel
50
vasculature
34
epithelium
33
musculature of body
28
brain
21
heart
7
limb
5
artery
5
kidney
Project
449
AMP
Genome assembly (visualization)
310
hg19
284
GRCh38
Lab
449
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
34
missing controlled_by
Audit category:
10
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
449 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
ascending aorta
16
+ See 15 more…
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
kidney epithelial cell
5
skeletal muscle myoblast
2
1
1
+ See 1 more…
See all biosamples
Download