Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
18
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
17
control
1
histone
1
histone modification
1
narrow histone mark
Date released
23
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
May, 2019
Available data
114
bam
92
bed narrowPeak
91
bigWig
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
38
Homo sapiens
Biosample type
38
tissue
Organ
842
pancreas
562
connective tissue
480
adipose tissue
432
epithelium
432
liver
298
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
13
GRCh38
12
hg19
Lab
38
AMP-T2D consortium
biosample_type!
in vitro differentiated cells
files.file_type!
bigBed narrowPeak
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
small intestine
BIOSAMPLE
ASSAY
38 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
11
1
5
tibial artery
5
1
1
gastrocnemius medialis
1
4
muscle of leg
1
1
distal epiphysis of femur
1
+ See 6 more…
See all biosamples
Download