Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ChIP-seq
3
pCHi-C
1
ATAC-seq
1
RRBS
Assay category
4
DNA binding
1
DNA accessibility
1
DNA methylation
Target of assay
3
control
1
histone
1
histone modification
1
narrow histone mark
Date released
3
June, 2019
1
February, 2021
1
July, 2019
1
March, 2020
1
May, 2021
1
November, 2020
1
October, 2019
Available data
92
bam
bigWig
72
tsv
17
bed narrowPeak
15
bigBed narrowPeak
8
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
9
Homo sapiens
Biosample type
in vitro differentiated cells
7
primary cell
1
stem cell
1
tissue
Organ
223
kidney
208
pancreas
169
heart
148
epithelium
101
bone element
97
liver
81
vasculature
80
blood vessel
61
brain
56
artery
55
eye
54
connective tissue
adipose tissue
31
limb
26
musculature of body
20
lung
16
skeleton
12
nerve
8
blood
8
bodily fluid
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
8
AMP
1
T1D
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
8
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
biosample_type!
in vitro differentiated cells
files.file_type!
bigWig
fastq
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
9 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
pCHi-C
ATAC-seq
RRBS
primary cell
cardiac fibroblast
2
1
osteoblast
1
1
adult endothelial progenitor cell
1
mesenchymal stem cell
1
stem cell
mesenchymal stem cell
1
tissue
islet of Langerhans
1
Download