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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
6
pCHi-C
4
WGBS
3
ATAC-seq
3
total RNA-seq
1
RNA microarray
1
RRBS
Assay category
58
DNA binding
5
DNA methylation
3
DNA accessibility
3
Transcription
Target of assay
31
histone
31
histone modification
27
control
20
broad histone mark
11
narrow histone mark
Date released
40
August, 2017
18
October, 2018
3
June, 2019
3
March, 2020
2
February, 2020
2
May, 2021
1
August, 2021
1
February, 2021
1
February, 2023
1
July, 2019
1
May, 2023
1
November, 2019
1
November, 2020
1
October, 2019
Available data
534
bam
bigWig
474
tsv
46
fastq
30
bed narrowPeak
25
bigBed narrowPeak
14
bed bed3+
9
bed broadPeak
8
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
75
Homo sapiens
Biosample type
68
tissue
in vitro differentiated cells
7
primary cell
1
stem cell
Organ
322
pancreas
223
kidney
219
epithelium
169
heart
168
liver
101
bone element
81
vasculature
80
blood vessel
74
connective tissue
65
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
74
AMP
2
T1D
Genome assembly (visualization)
6
hg19
3
GRCh38
Lab
74
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
biosample_type!
in vitro differentiated cells
files.file_type!
bigWig
organ_slims!
skeleton
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
pCHi-C
WGBS
ATAC-seq
total RNA-seq
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
1
1
1
thymus
2
+ See 2 more…
primary cell
cardiac fibroblast
2
1
osteoblast
1
1
adult endothelial progenitor cell
1
mesenchymal stem cell
1
stem cell
mesenchymal stem cell
1
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