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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
408
ChIP-seq
Assay category
408
DNA binding
Target of assay
827
histone modification
826
histone
459
transcription factor
418
narrow histone mark
408
broad histone mark
280
control
97
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
2
nucleotide modification
Date released
83
August, 2017
66
May, 2021
56
May, 2019
50
November, 2017
43
October, 2019
37
April, 2019
20
May, 2024
19
October, 2018
10
October, 2017
8
June, 2019
7
September, 2018
4
December, 2017
4
January, 2019
1
August, 2021
Available data
355
bigWig
350
bed narrowPeak
304
bam
228
bigBed narrowPeak
132
tagAlign
71
fastq
34
bed broadPeak
14
bigBed broadPeak
7
bed bed3+
Organism
404
Homo sapiens
Biosample type
303
tissue
91
primary cell
in vitro differentiated cells
13
cell line
1
stem cell
Organ
78
pancreas
70
brain
57
heart
45
blood vessel
45
vasculature
epithelium
35
liver
34
limb
24
connective tissue
20
adipose tissue
20
musculature of body
16
nerve
15
kidney
14
artery
9
vein
4
spleen
Project
364
AMP
44
T1D
Genome assembly (visualization)
322
GRCh38
300
hg19
Lab
323
AMP-T2D consortium
64
Kyle Gaulton, UCSD
20
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
10
inconsistent control read length
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
files.file_type!
cool
organ_slims!
epithelium
BIOSAMPLE
ASSAY
408 results
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Clear Filters
ChIP-seq
tissue
liver
22
left cardiac atrium
20
subcutaneous abdominal adipose tissue
20
tibial nerve
16
heart left ventricle
15
+ See 26 more…
primary cell
monocyte
44
CD8-positive, alpha-beta T cell
20
pancreatic endocrine cell
11
skeletal muscle myoblast
6
mesenchymal stem cell
4
+ See 3 more…
cell line
HepG2
9
Panc1
4
stem cell
hESC
1
See all biosamples
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