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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
total RNA-seq
100
ATAC-seq
50
ChIP-seq
2
RNA microarray
1
pCHi-C
1
single cell RNA-seq
Assay category
196
Transcription
100
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
683
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
288
bam
265
bigWig
196
tsv
50
tagAlign
27
bed narrowPeak
Organism
349
Homo sapiens
Biosample type
196
tissue
152
primary cell
in vitro differentiated cells
1
cell line
Organ
199
liver
6
epithelium
3
kidney
Project
304
AMP
45
T1D
Genome assembly (visualization)
265
hg19
212
GRCh38
Lab
304
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
2
audit script error
biosample_type!
in vitro differentiated cells
files.file_type!
csv
BIOSAMPLE
ASSAY
349 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
RNA microarray
pCHi-C
single cell RNA-seq
tissue
liver
143
50
kidney
1
kidney interstitium
1
renal glomerulus
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
hepatocyte
5
B cell
2
2
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cell line
HepG2
1
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