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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
30
DNase-seq
25
total RNA-seq
4
pCHi-C
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
200
DNA binding
34
DNA accessibility
32
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
177
histone
177
histone modification
113
narrow histone mark
64
broad histone mark
26
control
Date released
86
October, 2019
82
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
12
February, 2020
8
August, 2021
6
October, 2017
3
March, 2020
1
February, 2023
1
May, 2021
Available data
251
bam
230
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
35
tsv
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
275
Homo sapiens
Biosample type
255
tissue
12
primary cell
8
cell line
in vitro differentiated cells
Organ
541
connective tissue
472
pancreas
447
adipose tissue
392
heart
354
kidney
326
liver
265
brain
262
epithelium
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
9
blood
9
bodily fluid
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
274
AMP
1
T1D
Genome assembly (visualization)
210
GRCh38
155
hg19
Lab
274
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
biosample_type!
in vitro differentiated cells
files.file_type!
fastq
BIOSAMPLE
ASSAY
275 results
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ChIP-seq
DNase-seq
total RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
11
12
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 78 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
cell line
H1-hESC
8
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