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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
Assay category
33
DNA binding
Target of assay
875
histone modification
874
histone
450
transcription factor
448
narrow histone mark
426
broad histone mark
277
control
92
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
15
November, 2017
7
November, 2018
6
January, 2019
2
December, 2017
2
December, 2018
1
August, 2017
Available data
33
bam
33
bed narrowPeak
33
bigBed narrowPeak
33
bigWig
33
fastq
5
bed broadPeak
5
bigBed broadPeak
Organism
33
Homo sapiens
Biosample type
30
cell line
in vitro differentiated cells
2
tissue
1
primary cell
Organ
22
liver
10
blood
10
bodily fluid
Project
33
AMP
Genome assembly (visualization)
33
hg19
31
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
8
inconsistent control run_type
biosample_type!
in vitro differentiated cells
files.file_type!
hdf5
month_released!
October, 2018
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
cell line
HepG2
20
GM12878
10
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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