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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
61
single cell RNA-seq
37
snATAC-seq
10
ATAC-seq
6
WGBS
Assay category
153
Transcription
47
DNA accessibility
6
DNA methylation
Date released
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
19
April, 2020
7
August, 2020
Available data
169
fastq
19
zippedFastqFolder
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
hic
Organism
205
Homo sapiens
Biosample type
187
primary cell
19
tissue
Organ
69
epithelium
69
pancreas
19
lung
Project
187
HPAP
19
LungMap
Genome assembly (visualization)
10
GRCh38
Lab
3558
AMP-T2D consortium
272
Kyle Gaulton, UCSD
187
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
36
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
audit script error
biosample_type!
in vitro differentiated cells
files.file_type!
hic
month_released!
May, 2022
BIOSAMPLE
ASSAY
206 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
primary cell
Langerhans cell
52
27
pancreatic alpha cell
42
7
6
exocrine cell
39
pancreatic beta cell
11
3
tissue
lung
9
10
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