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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
461
total RNA-seq
86
ChIP-seq
7
ATAC-seq
7
DNase-seq
6
WGBS
4
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
468
Transcription
86
DNA binding
14
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
41
histone
41
histone modification
27
control
24
broad histone mark
18
transcription factor
17
narrow histone mark
6
RNA binding protein
Date released
447
February, 2021
57
August, 2017
23
October, 2018
18
July, 2019
18
June, 2019
November, 2020
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
528
bam
508
bigWig
469
tsv
46
fastq
28
bed narrowPeak
24
bigBed narrowPeak
13
bed bed3+
8
bed broadPeak
8
tagAlign
7
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
580
Homo sapiens
Biosample type
547
tissue
in vitro differentiated cells
33
primary cell
1
stem cell
Organ
926
pancreas
774
liver
581
connective tissue
490
adipose tissue
488
epithelium
389
heart
353
kidney
286
brain
233
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
8
embryo
5
gonad
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
580
AMP
1
T1D
Genome assembly (visualization)
510
hg19
506
GRCh38
Lab
580
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
15
inconsistent ontology term
Audit category:
12
missing controlled_by
biosample_type!
in vitro differentiated cells
files.file_type!
hic
month_released!
November, 2020
organ_slims!
ovary
BIOSAMPLE
ASSAY
581 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Hi-C
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
+ See 4 more…
primary cell
cardiac fibroblast
5
3
1
mesenchymal stem cell
7
pancreatic stellate cell
4
osteoblast
1
1
1
brain pericyte
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
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