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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
472
total RNA-seq
152
ChIP-seq
44
DNase-seq
16
ATAC-seq
7
WGBS
5
Hi-C
4
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
1
RNA microarray
1
RRBS
Assay category
479
Transcription
152
DNA binding
60
DNA accessibility
8
DNA methylation
5
3D chromatin structure
Target of assay
90
histone
90
histone modification
58
broad histone mark
44
control
32
narrow histone mark
18
transcription factor
6
RNA binding protein
Date released
453
February, 2021
71
October, 2019
57
August, 2017
50
June, 2019
23
July, 2019
23
October, 2018
7
May, 2019
6
November, 2020
5
February, 2020
2
April, 2018
2
July, 2018
2
March, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
648
bam
604
bigWig
480
tsv
122
bed narrowPeak
109
bigBed narrowPeak
50
bed bed3+
46
fastq
45
bed broadPeak
44
bigBed broadPeak
8
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
708
Homo sapiens
Biosample type
669
tissue
in vitro differentiated cells
39
primary cell
1
stem cell
Organ
936
pancreas
774
liver
587
connective tissue
494
epithelium
490
adipose tissue
389
heart
353
kidney
286
brain
233
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
8
embryo
5
gonad
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
708
AMP
1
T1D
Genome assembly (visualization)
612
hg19
608
GRCh38
Lab
708
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
12
missing controlled_by
biosample_type!
in vitro differentiated cells
files.file_type!
hic
organ_slims!
ovary
BIOSAMPLE
ASSAY
709 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
single cell RNA-seq
small RNA-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
tibial nerve
5
35
2
1
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
2
1
+ See 17 more…
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
1
2
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
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