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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
Assay category
55
DNA binding
Target of assay
333
transcription factor
107
control
91
histone modification
90
histone
82
recombinant protein
55
RNA binding protein
55
narrow histone mark
35
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
33
November, 2017
19
November, 2018
2
December, 2017
1
August, 2021
Available data
55
bam
55
fastq
54
bed narrowPeak
54
bigWig
53
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
tar
Organism
55
Homo sapiens
Biosample type
53
cell line
in vitro differentiated cells
2
tissue
Organ
55
liver
11
heart
10
blood
10
bodily fluid
9
pancreas
6
connective tissue
6
epithelium
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
Project
55
AMP
Genome assembly (visualization)
52
hg19
49
GRCh38
Lab
54
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
biosample_type!
in vitro differentiated cells
files.file_type!
tar
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
cell line
HepG2
53
tissue
liver
1
right lobe of liver
1
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