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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
ATAC-seq
62
ChIP-seq
53
total RNA-seq
41
WGBS
14
DNase-seq
7
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
101
DNA accessibility
62
DNA binding
53
Transcription
47
DNA methylation
7
3D chromatin structure
Target of assay
36
histone
36
histone modification
23
control
21
narrow histone mark
15
broad histone mark
6
RNA binding protein
6
transcription factor
3
nucleotide modification
Date released
80
May, 2022
50
February, 2023
September, 2018
October, 2019
29
August, 2017
20
June, 2019
19
September, 2020
17
May, 2021
15
November, 2019
8
July, 2019
7
August, 2020
6
August, 2021
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
March, 2020
3
October, 2022
Available data
200
bam
195
bigWig
177
fastq
tsv
80
zippedFastqFolder
77
bed narrowPeak
34
bigBed narrowPeak
19
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
5
bedpe bed3+
5
hic
4
tagAlign
3
cool
2
hdf5
Organism
278
Homo sapiens
Biosample type
224
primary cell
43
cell line
in vitro differentiated cells
12
tissue
Organ
596
liver
462
pancreas
306
kidney
279
epithelium
219
heart
175
brain
121
vasculature
115
blood vessel
112
connective tissue
101
bone element
88
adipose tissue
87
musculature of body
69
blood
69
bodily fluid
57
artery
50
limb
35
eye
24
spleen
19
lung
18
ureter
16
skeleton
1
bone marrow
1
pericardium
1
thymus
1
vein
Project
146
HPAP
131
AMP
2
T1D
Genome assembly (visualization)
87
hg19
75
GRCh38
Lab
146
Klaus Kaestner, Upenn
127
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
50
inconsistent ontology term
3
audit script error
Audit category:
4
inconsistent control read length
biosample_type!
in vitro differentiated cells
files.file_type!
tsv
month_released!
October, 2019
September, 2018
BIOSAMPLE
ASSAY
279 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
WGBS
DNase-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
32
13
42
25
1
pancreatic beta cell
19
13
11
16
1
kidney epithelial cell
5
1
1
pancreatic acinar cell
6
1
hepatocyte
4
1
1
+ See 12 more…
cell line
EndoC_BH1
18
15
1
6
2
1
tissue
pigmented layer of retina
12
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