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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
total RNA-seq
63
ChIP-seq
8
ATAC-seq
8
DNase-seq
6
WGBS
4
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
472
Transcription
63
DNA binding
16
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
41
histone
41
histone modification
24
broad histone mark
17
narrow histone mark
13
transcription factor
9
control
1
RNA binding protein
Date released
447
February, 2021
57
August, 2017
October, 2018
18
July, 2019
18
June, 2019
6
November, 2020
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
511
bam
508
bigWig
473
tsv
25
bed narrowPeak
23
fastq
20
bigBed narrowPeak
14
bed bed3+
9
bed broadPeak
8
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
563
Homo sapiens
Biosample type
524
tissue
in vitro differentiated cells
39
primary cell
1
stem cell
Organ
884
pancreas
736
liver
564
connective tissue
498
epithelium
467
adipose tissue
392
heart
292
kidney
286
brain
236
vasculature
230
blood vessel
141
artery
122
limb
95
musculature of body
71
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
563
AMP
1
T1D
Genome assembly (visualization)
511
hg19
507
GRCh38
Lab
563
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
15
inconsistent ontology term
Audit category:
12
missing controlled_by
biosample_type!
in vitro differentiated cells
files.file_type!
txt
lab.title!
Karen Mohlke, UNC
month_released!
October, 2018
BIOSAMPLE
ASSAY
564 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Hi-C
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
subcutaneous adipose tissue
7
1
1
1
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primary cell
cardiac fibroblast
5
3
1
osteoblast
5
2
1
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
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