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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
341
ChIP-seq
Assay category
341
DNA binding
Target of assay
706
histone modification
705
histone
448
transcription factor
364
narrow histone mark
341
broad histone mark
276
control
97
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
58
May, 2019
55
October, 2019
46
November, 2017
44
May, 2021
37
April, 2019
37
August, 2017
19
October, 2018
17
September, 2018
8
June, 2019
6
November, 2019
5
October, 2017
4
December, 2017
4
January, 2019
1
August, 2021
Available data
390
bigWig
383
bed narrowPeak
341
bam
235
bigBed narrowPeak
133
tagAlign
87
fastq
36
bed broadPeak
16
bigBed broadPeak
8
bed bed3+
Organism
337
Homo sapiens
Biosample type
222
tissue
100
primary cell
in vitro differentiated cells
18
cell line
1
stem cell
Organ
70
pancreas
61
brain
45
blood vessel
45
vasculature
37
epithelium
37
heart
34
limb
22
liver
16
nerve
15
kidney
14
artery
9
vein
8
musculature of body
4
connective tissue
4
spleen
Project
297
AMP
44
T1D
Genome assembly (visualization)
335
GRCh38
302
hg19
Lab
297
AMP-T2D consortium
44
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
24
missing controlled_by
Audit category:
10
inconsistent control read length
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
341 results
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Clear Filters
ChIP-seq
tissue
tibial nerve
16
heart left ventricle
15
tibial artery
14
body of pancreas
11
kidney
10
+ See 23 more…
primary cell
monocyte
44
pancreatic endocrine cell
11
endothelial cell of umbilical vein
9
pancreatic ductal cell
6
skeletal muscle myoblast
6
+ See 8 more…
cell line
HepG2
8
EndoC_BH1
6
Panc1
4
stem cell
hESC
1
See all biosamples
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