Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
ChIP-seq
74
total RNA-seq
70
single cell RNA-seq
24
ATAC-seq
17
DNase-seq
1
FAIRE-seq
Assay category
144
Transcription
107
DNA binding
42
DNA accessibility
Target of assay
78
histone
78
histone modification
41
narrow histone mark
37
broad histone mark
23
control
6
RNA binding protein
6
transcription factor
Date released
61
September, 2018
33
April, 2018
33
July, 2018
32
October, 2019
29
August, 2017
26
February, 2021
20
June, 2019
15
November, 2019
6
November, 2017
5
December, 2019
5
July, 2019
5
May, 2019
5
May, 2021
5
September, 2017
4
August, 2021
3
August, 2018
3
March, 2020
2
October, 2018
1
June, 2018
Available data
293
bam
281
bigWig
238
fastq
154
tsv
133
bed narrowPeak
80
zippedFastqFolder
62
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
293
Homo sapiens
Biosample type
242
primary cell
51
cell line
in vitro differentiated cells
Organ
686
pancreas
666
liver
534
connective tissue
442
adipose tissue
293
epithelium
243
brain
210
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
24
spleen
20
vein
18
ureter
8
embryo
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
289
AMP
4
T1D
Genome assembly (visualization)
264
GRCh38
263
hg19
Lab
293
AMP-T2D consortium
Audit category:
58
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
biosample_type!
in vitro differentiated cells
files.file_type!
csv
vcf
BIOSAMPLE
ASSAY
293 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic beta cell
13
10
12
7
pancreatic alpha cell
13
10
12
6
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
endothelial cell of umbilical vein
17
2
1
+ See 18 more…
cell line
EndoC_BH1
15
33
1
glomerular visceral epithelial cell
1
1
See all biosamples
Download