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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
total RNA-seq
84
ChIP-seq
20
ATAC-seq
Assay category
102
Transcription
84
DNA binding
20
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
135
May, 2021
45
May, 2020
24
May, 2022
1
March, 2019
1
October, 2017
Available data
300
bigWig
270
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
64
xls
63
txt
7
hic
5
bedpe bed3+
3
cool
2
bed bed3+
2
bed broadPeak
1
bedpe
1
vcf
Organism
206
Homo sapiens
Biosample type
180
primary cell
26
tissue
Organ
26
pancreas
Project
180
T1D
26
AMP
Genome assembly (visualization)
199
hg19
181
GRCh38
Lab
AMP-T2D consortium
204
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
biosample_type!
in vitro differentiated cells
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
206 results
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total RNA-seq
ChIP-seq
ATAC-seq
primary cell
monocyte
53
84
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
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tissue
islet of Langerhans
6
20
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