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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
5
3D chromatin structure
1
DNA accessibility
Date released
4
July, 2019
May, 2021
1
February, 2021
1
May, 2022
1
October, 2019
Available data
bam
2696
bigWig
1557
bed narrowPeak
1375
tsv
1217
fastq
1025
bigBed narrowPeak
321
bed broadPeak
284
bigBed broadPeak
274
tagAlign
246
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
7
Homo sapiens
Biosample type
in vitro differentiated cells
4
primary cell
2
cell line
1
tissue
Organ
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
connective tissue
1
musculature of body
1
pancreas
Project
7
AMP
Genome assembly (visualization)
7
hg19
1
GRCh38
Lab
7
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
files.file_type!
bam
month_released!
May, 2021
BIOSAMPLE
ASSAY
7 results
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Clear Filters
Hi-C
pCHi-C
snATAC-seq
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
1
Panc1
1
tissue
skeletal muscle tissue
1
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