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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
8
ChIP-seq
8
Hi-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
205
DNA accessibility
8
3D chromatin structure
8
DNA binding
2
Transcription
Target of assay
5
histone
5
histone modification
3
control
3
narrow histone mark
2
broad histone mark
Date released
187
June, 2019
August, 2017
9
November, 2018
8
October, 2019
4
July, 2019
3
August, 2021
3
December, 2017
3
October, 2022
2
February, 2021
2
May, 2021
2
September, 2017
1
May, 2022
1
November, 2020
Available data
2873
bam
2686
bigWig
1586
bed narrowPeak
1380
tsv
984
bigBed narrowPeak
984
fastq
287
tagAlign
281
bed broadPeak
270
bigBed broadPeak
222
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
tagAlign bed3+
1
vcf
Organism
225
Homo sapiens
Biosample type
179
tissue
40
primary cell
in vitro differentiated cells
3
cell line
3
stem cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
24
epithelium
18
ureter
13
pancreas
13
vasculature
11
blood vessel
10
connective tissue
10
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
222
AMP
3
HPAP
Genome assembly (visualization)
213
GRCh38
202
hg19
Lab
220
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Kyle Gaulton, UCSD
Audit category:
4
audit script error
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
files.file_type!
tagAlign bed3+
month_released!
August, 2017
BIOSAMPLE
ASSAY
225 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 41 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 22 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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