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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
35
ChIP-seq
5
Hi-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
205
DNA accessibility
35
DNA binding
5
3D chromatin structure
2
Transcription
Target of assay
18
histone
18
histone modification
13
transcription factor
10
narrow histone mark
8
broad histone mark
4
control
2
RNA binding protein
Date released
187
June, 2019
26
August, 2017
9
November, 2018
9
October, 2019
4
July, 2019
3
August, 2021
3
December, 2017
2
February, 2021
2
May, 2021
2
September, 2017
1
May, 2022
1
November, 2020
Available data
3100
bam
2910
bigWig
1685
bed narrowPeak
1469
tsv
1216
fastq
1025
bigBed narrowPeak
358
tagAlign
320
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
249
Homo sapiens
Biosample type
206
tissue
37
primary cell
in vitro differentiated cells
3
cell line
3
stem cell
Organ
78
kidney
36
brain
36
limb
34
musculature of body
30
heart
29
pancreas
21
epithelium
18
ureter
14
connective tissue
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
spleen
Project
249
AMP
Genome assembly (visualization)
240
GRCh38
226
hg19
Lab
247
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
249 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 43 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 19 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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