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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 204DNase-seq
  • 34ChIP-seq
  • 5Hi-C
  • 2pCHi-C
  • 2total RNA-seq
  • 1snATAC-seq
Assay category
  • 205DNA accessibility
  • 34DNA binding
  • 53D chromatin structure
  • 2Transcription
Target of assay
  • 17histone
  • 17histone modification
  • 13transcription factor
  • 9narrow histone mark
  • 8broad histone mark
  • 4control
  • 2RNA binding protein
Date released
  • 187June, 2019
  • 26August, 2017
  • 9November, 2018
  • 8October, 2019
  • 4July, 2019
  • 3August, 2021
  • 3December, 2017
  • 2February, 2021
  • 2May, 2021
  • 2September, 2017
  • 1May, 2022
  • 1November, 2020
Available data
  • 3101bam
  • 2910bigWig
  • 1685bed narrowPeak
  • 1469tsv
  • 1217fastq
  • 1025bigBed narrowPeak
  • 358tagAlign
  • 321bed broadPeak
  • 284bigBed broadPeak
  • 248bed bed3+
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 19hic
  • 16bedpe bed3+
  • 8csv
  • 7bed bed3
  • 5hdf5
  • 4tar
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 248Homo sapiens
Biosample type
  • 205tissue
  • 37primary cell
  • in vitro differentiated cells
  • 3cell line
  • 3stem cell
Organ
  • 78kidney
  • 36limb
  • 35brain
  • 34musculature of body
  • 30heart
  • 29pancreas
  • 21epithelium
  • 18ureter
  • 14connective tissue
  • 13liver
  • 13vasculature
  • 11blood vessel
  • 6adipose tissue
  • 4artery
  • 4eye
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 248AMP
Genome assembly (visualization)
  • 239GRCh38
  • 225hg19
Lab
  • 246AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
Audit category:
  • 4inconsistent ontology term
  • 1audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 2inconsistent control read length
  • 1inconsistent assembly
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

248 results

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Clear Filters
DNase-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans21
heart18
muscle of arm17
brain14
kidney13
primary cell
hepatocyte13
cardiac fibroblast3
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum11
brain microvascular endothelial cell11
cell line
Panc111
HepG21
stem cell
hESC3
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