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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
46
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
67
DNA accessibility
52
Transcription
41
DNA methylation
Date released
134
May, 2022
19
September, 2020
5
February, 2023
2
February, 2021
Available data
2855
bam
2707
bigWig
1498
bed narrowPeak
1454
tsv
1217
fastq
957
bigBed narrowPeak
312
bed broadPeak
309
tagAlign
275
bigBed broadPeak
240
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
17
hic
15
bedpe bed3+
8
csv
7
bed bed3
4
hdf5
3
cool
3
tar
1
bedpe
1
vcf
Organism
160
Homo sapiens
Biosample type
154
primary cell
in vitro differentiated cells
5
tissue
1
cell line
Organ
80
epithelium
80
pancreas
4
bone element
4
skeleton
1
brain
1
connective tissue
1
liver
Project
153
HPAP
7
AMP
Genome assembly (visualization)
7
hg19
2
GRCh38
Lab
153
Klaus Kaestner, Upenn
7
AMP-T2D consortium
Audit category:
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
month_released!
October, 2019
organ_slims!
small intestine
BIOSAMPLE
ASSAY
160 results
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single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
osteoblast
1
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
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