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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
71
ChIP-seq
2
ATAC-seq
Assay category
206
DNA accessibility
71
DNA binding
Target of assay
47
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
7
RNA binding protein
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
66
November, 2017
August, 2017
9
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2841
bam
2644
bigWig
1554
bed narrowPeak
1374
tsv
952
bigBed narrowPeak
783
fastq
287
tagAlign
277
bed broadPeak
266
bigBed broadPeak
222
bed bed3+
158
txt
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
hic
13
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
277
Homo sapiens
Biosample type
187
tissue
55
cell line
35
primary cell
Organ
78
kidney
59
liver
47
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
pancreas
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
277
AMP
Genome assembly (visualization)
259
GRCh38
253
hg19
Lab
275
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
12
inconsistent control read length
biosample_type!
in vitro differentiated cells
lab.title!
Klaus Kaestner, Upenn
month_released!
August, 2017
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
277 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
54
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
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