Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
110
ChIP-seq
1
ATAC-seq
Assay category
197
DNA accessibility
110
DNA binding
Target of assay
62
histone
62
histone modification
48
transcription factor
34
broad histone mark
28
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
182
June, 2019
68
November, 2017
40
August, 2017
9
November, 2018
3
October, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
2849
bam
2687
bigWig
1510
bed narrowPeak
1375
tsv
1140
fastq
932
bigBed narrowPeak
352
tagAlign
307
bed broadPeak
271
bigBed broadPeak
237
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
16
hic
14
bedpe bed3+
7
bed bed3
7
csv
3
cool
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
301
Homo sapiens
Biosample type
207
tissue
59
cell line
41
primary cell
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
20
pancreas
18
ureter
17
vasculature
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
307
AMP
Genome assembly (visualization)
284
hg19
269
GRCh38
Lab
306
AMP-T2D consortium
1
Mark McCarthy, Oxford
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
lab.title!
Stephen Parker, UMich
month_released!
September, 2018
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
307 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 15 more…
See all biosamples
Download