Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
DNase-seq
112
ChIP-seq
2
ATAC-seq
Assay category
200
DNA accessibility
112
DNA binding
Target of assay
63
histone
63
histone modification
49
transcription factor
34
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
40
August, 2017
9
November, 2018
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2855
bam
2707
bigWig
1498
bed narrowPeak
1455
tsv
1217
fastq
957
bigBed narrowPeak
312
bed broadPeak
309
tagAlign
275
bigBed broadPeak
240
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
17
hic
15
bedpe bed3+
8
csv
7
bed bed3
4
hdf5
3
cool
3
tar
1
bedpe
1
vcf
Organism
306
Homo sapiens
Biosample type
209
tissue
58
cell line
45
primary cell
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
46
musculature of body
32
limb
30
heart
20
pancreas
18
epithelium
18
ureter
11
vasculature
9
connective tissue
7
blood vessel
4
eye
3
adipose tissue
2
artery
1
spleen
Project
312
AMP
Genome assembly (visualization)
288
hg19
274
GRCh38
Lab
310
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
August, 2022
October, 2019
BIOSAMPLE
ASSAY
312 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
See all biosamples
Download