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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
44
ChIP-seq
2
ATAC-seq
Assay category
207
DNA accessibility
44
DNA binding
Target of assay
42
histone
42
histone modification
26
broad histone mark
16
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
November, 2017
40
August, 2017
9
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2704
bam
2571
bigWig
1462
tsv
1372
bed narrowPeak
893
fastq
713
bigBed narrowPeak
280
tagAlign
251
bed broadPeak
248
bed bed3+
220
bigBed broadPeak
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
245
Homo sapiens
Biosample type
207
tissue
43
primary cell
1
cell line
in vitro differentiated cells
Organ
78
kidney
46
musculature of body
36
limb
35
brain
30
heart
21
pancreas
18
epithelium
18
ureter
13
vasculature
11
blood vessel
9
connective tissue
5
liver
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
251
AMP
Genome assembly (visualization)
227
hg19
226
GRCh38
Lab
249
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
December, 2019
November, 2017
BIOSAMPLE
ASSAY
251 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 18 more…
cell line
Panc1
1
See all biosamples
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