Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
DNase-seq
49
ChIP-seq
2
ATAC-seq
Assay category
174
DNA accessibility
49
DNA binding
Target of assay
52
histone
histone modification
49
transcription factor
28
broad histone mark
24
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
154
June, 2019
47
November, 2017
9
November, 2018
7
October, 2019
3
August, 2017
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2352
bam
2075
bigWig
1460
tsv
1049
fastq
879
bed narrowPeak
613
bigBed narrowPeak
223
bed broadPeak
221
bigBed broadPeak
197
bed bed3+
157
txt
153
zippedFastqFolder
64
xls
61
tagAlign
32
bed bedMethyl
32
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
vcf
Organism
223
Homo sapiens
Biosample type
146
tissue
45
cell line
32
primary cell
in vitro differentiated cells
Organ
78
kidney
49
liver
36
limb
35
brain
musculature of body
30
heart
18
epithelium
18
ureter
13
vasculature
10
blood vessel
9
pancreas
8
connective tissue
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
223
AMP
Genome assembly (visualization)
208
GRCh38
199
hg19
Lab
221
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
inconsistent control read length
biosample_type!
in vitro differentiated cells
month_released!
January, 2018
organ_slims!
musculature of body
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
223 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 36 more…
cell line
HepG2
44
Panc1
1
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
1
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 17 more…
See all biosamples
Download