Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
DNase-seq
77
ChIP-seq
2
ATAC-seq
Assay category
203
DNA accessibility
77
DNA binding
Target of assay
65
histone
65
histone modification
49
transcription factor
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
other post-translational modification
Date released
185
June, 2019
59
November, 2017
18
August, 2017
9
November, 2018
5
October, 2019
2
October, 2017
1
March, 2019
1
November, 2020
Available data
2667
bam
2444
bigWig
1411
tsv
1237
bed narrowPeak
1125
fastq
774
bigBed narrowPeak
280
bed broadPeak
263
bigBed broadPeak
236
bed bed3+
219
tagAlign
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
278
Homo sapiens
Biosample type
189
tissue
50
cell line
41
primary cell
in vitro differentiated cells
Organ
78
kidney
54
liver
43
brain
38
musculature of body
36
limb
30
heart
20
epithelium
18
ureter
15
vasculature
13
pancreas
11
blood vessel
9
connective tissue
artery
4
eye
3
adipose tissue
2
nerve
2
vein
1
spleen
Project
280
AMP
Genome assembly (visualization)
256
hg19
255
GRCh38
Lab
278
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
biosample_type!
in vitro differentiated cells
organ_slims!
artery
target.investigated_as!
broad histone mark
other post-translational modification
BIOSAMPLE
ASSAY
280 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
49
Panc1
1
primary cell
skeletal muscle myoblast
1
7
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 18 more…
See all biosamples
Download