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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
105
ChIP-seq
2
ATAC-seq
Assay category
207
DNA accessibility
105
DNA binding
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
63
November, 2017
38
August, 2017
9
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
3003
bam
2809
bigWig
1586
bed narrowPeak
1468
tsv
1134
fastq
934
bigBed narrowPeak
358
tagAlign
312
bed broadPeak
275
bigBed broadPeak
246
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
3
cool
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
306
Homo sapiens
Biosample type
213
tissue
55
cell line
44
primary cell
in vitro differentiated cells
Organ
78
kidney
59
liver
46
musculature of body
44
brain
36
limb
30
heart
21
pancreas
20
epithelium
18
ureter
15
vasculature
12
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
312
AMP
Genome assembly (visualization)
288
hg19
274
GRCh38
Lab
310
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
organ_slims!
pericardium
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
312 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
cell line
HepG2
54
Panc1
1
primary cell
skeletal muscle myoblast
1
11
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 18 more…
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