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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
147
ATAC-seq
106
ChIP-seq
Assay category
147
DNA accessibility
106
DNA binding
Target of assay
90
histone
90
histone modification
53
broad histone mark
37
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
78
August, 2021
63
February, 2023
40
May, 2024
30
May, 2021
20
August, 2017
20
May, 2022
1
April, 2019
1
November, 2017
Available data
bam
2910
bigWig
1685
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
253
Homo sapiens
Biosample type
209
tissue
30
primary cell
14
cell line
Organ
76
heart
64
kidney
35
artery
35
blood vessel
35
vasculature
34
liver
27
eye
13
musculature of body
12
epithelium
6
pancreas
2
adipose tissue
2
connective tissue
1
brain
Project
253
AMP
Genome assembly (visualization)
139
GRCh38
114
hg19
Lab
85
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
biosample_type!
in vitro differentiated cells
files.file_type!
bam
csv
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
253 results
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Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
left cardiac atrium
40
coronary artery
35
liver
20
retina
15
+ See 7 more…
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
See all biosamples
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