Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 16Hi-C
Assay category
  • 163D chromatin structure
Date released
  • 8March, 2020
  • 3October, 2022
  • 2August, 2021
  • 2November, 2019
  • 1October, 2019
Available data
  • 3101bam
  • 2910bigWig
  • 1685bed narrowPeak
  • 1469tsv
  • 1217fastq
  • 1025bigBed narrowPeak
  • 358tagAlign
  • 321bed broadPeak
  • 284bigBed broadPeak
  • 248bed bed3+
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 19hic
  • 16bedpe bed3+
  • 8csv
  • 7bed bed3
  • 5hdf5
  • 4tar
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 16Homo sapiens
Biosample type
  • 10tissue
  • in vitro differentiated cells
  • 4primary cell
  • 2cell line
Organ
  • 7pancreas
  • 5epithelium
  • 3heart
  • 2blood vessel
  • 2liver
  • 2musculature of body
  • 2vasculature
  • 1vein
Project
  • 13AMP
  • 3HPAP
Genome assembly (visualization)
  • 15hg19
Lab
  • 11AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 2Bing Ren, UCSD
Audit category:
  • 3audit script error
  • 1inconsistent ontology term
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

16 results

search-icontable-tab-icon
Clear Filters
Hi-C
tissue
islet of Langerhans2
psoas muscle2
aorta1
heart1
heart left ventricle1
primary cell
endothelial cell of umbilical vein1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
cell line
EndoC_BH11
HepG21
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego