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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
352
ChIP-seq
17
RRBS
11
WGBS
Assay category
352
DNA binding
28
DNA methylation
Target of assay
295
histone
295
histone modification
162
narrow histone mark
133
broad histone mark
56
control
1
transcription factor
Date released
84
May, 2021
78
November, 2017
77
August, 2017
50
May, 2020
49
October, 2019
15
July, 2019
14
October, 2017
7
November, 2018
4
August, 2021
2
February, 2021
Available data
2819
bam
2615
bigWig
1448
bed narrowPeak
1276
tsv
1144
fastq
917
bigBed narrowPeak
352
tagAlign
291
bed broadPeak
254
bigBed broadPeak
218
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
16
hic
13
bedpe bed3+
7
bed bed3
7
csv
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
373
Homo sapiens
Biosample type
256
tissue
109
primary cell
in vitro differentiated cells
15
cell line
Organ
120
brain
89
liver
22
pancreas
19
musculature of body
heart
11
connective tissue
10
adipose tissue
10
epithelium
8
vasculature
7
blood vessel
6
artery
4
kidney
2
spleen
1
eye
1
limb
1
pericardium
1
pituitary gland
Project
296
AMP
84
T1D
Genome assembly (visualization)
235
GRCh38
234
hg19
Lab
296
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
September, 2018
organ_slims!
heart
BIOSAMPLE
ASSAY
380 results
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Clear Filters
ChIP-seq
RRBS
WGBS
tissue
liver
70
1
skeletal muscle tissue
15
2
substantia nigra
16
brain
14
1
caudate nucleus
15
+ See 50 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
1
hepatocyte
4
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 5 more…
cell line
HepG2
12
1
iPSC derived cell line
2
See all biosamples
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