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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
1
DNase-seq
Assay category
79
DNA binding
1
DNA accessibility
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
14
August, 2017
2
October, 2019
Available data
3059
bam
2876
bigWig
1658
bed narrowPeak
1464
tsv
1176
fastq
999
bigBed narrowPeak
358
tagAlign
319
bed broadPeak
282
bigBed broadPeak
bed bed3+
158
txt
134
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
80
Homo sapiens
Biosample type
58
cell line
22
primary cell
in vitro differentiated cells
Organ
58
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
Project
80
AMP
Genome assembly (visualization)
80
hg19
62
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
files.file_type!
bed bed3+
month_released!
September, 2020
organ_slims!
nerve
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
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