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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ChIP-seq
141
total RNA-seq
68
single cell RNA-seq
27
snATAC-seq
11
WGBS
4
RRBS
3
ATAC-seq
1
GRO-seq
1
Hi-C
Assay category
209
Transcription
177
DNA binding
30
DNA accessibility
15
DNA methylation
1
3D chromatin structure
Target of assay
132
control
27
transcription factor
18
histone
18
histone modification
11
narrow histone mark
7
broad histone mark
3
RNA binding protein
1
recombinant protein
Date released
143
August, 2017
67
November, 2017
39
February, 2021
39
February, 2023
27
October, 2018
22
September, 2020
17
July, 2018
15
April, 2018
15
November, 2018
13
December, 2017
9
January, 2019
6
May, 2022
6
September, 2017
5
December, 2018
5
October, 2017
2
June, 2018
1
January, 2018
1
March, 2019
1
September, 2018
Available data
2808
bam
2629
bigWig
bed narrowPeak
1315
tsv
979
fastq
963
bigBed narrowPeak
354
tagAlign
299
bed broadPeak
262
bigBed broadPeak
227
bed bed3+
158
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
13
hic
11
bedpe bed3+
8
csv
7
bed bed3
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
432
Homo sapiens
Biosample type
208
tissue
143
primary cell
80
cell line
in vitro differentiated cells
2
stem cell
Organ
326
pancreas
epithelium
96
liver
37
connective tissue
34
adipose tissue
10
spleen
7
brain
6
blood
6
bodily fluid
4
vasculature
3
blood vessel
2
musculature of body
2
vein
Project
333
AMP
100
HPAP
Genome assembly (visualization)
191
hg19
176
GRCh38
1
hg18
Lab
325
AMP-T2D consortium
100
Klaus Kaestner, Upenn
6
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
6
inconsistent ontology term
Audit category:
35
missing controlled_by
Audit category:
2
inconsistent control read length
biosample_type!
in vitro differentiated cells
files.file_type!
bed narrowPeak
organ_slims!
epithelium
BIOSAMPLE
ASSAY
433 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
RRBS
ATAC-seq
GRO-seq
Hi-C
tissue
islet of Langerhans
16
97
6
2
liver
17
1
1
white adipose tissue
12
body of pancreas
8
2
spleen
8
2
+ See 8 more…
primary cell
Langerhans cell
34
27
exocrine cell
39
pancreatic endocrine cell
12
pancreatic cell
9
mesenchymal cell
6
+ See 8 more…
cell line
HepG2
67
5
1
1
GM12878
6
stem cell
hESC
1
1
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