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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
330
ChIP-seq
193
DNase-seq
Assay category
330
DNA binding
193
DNA accessibility
Target of assay
237
histone
237
histone modification
139
narrow histone mark
98
broad histone mark
47
control
46
transcription factor
5
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
127
November, 2017
84
May, 2021
August, 2017
52
October, 2019
50
May, 2020
14
October, 2017
9
November, 2018
4
August, 2021
2
February, 2021
1
November, 2020
Available data
2688
bam
2531
bigWig
1453
bed narrowPeak
1312
tsv
978
fastq
901
bigBed narrowPeak
281
tagAlign
264
bed broadPeak
253
bigBed broadPeak
209
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
16
hic
14
bedpe bed3+
8
csv
7
bed bed3
3
cool
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
523
Homo sapiens
Biosample type
350
tissue
111
primary cell
62
cell line
in vitro differentiated cells
Organ
156
brain
118
liver
78
kidney
36
heart
36
limb
33
musculature of body
26
epithelium
vasculature
19
blood vessel
18
ureter
10
artery
8
connective tissue
7
pancreas
4
eye
4
vein
2
adipose tissue
2
nerve
1
pituitary gland
1
spleen
Project
439
AMP
84
T1D
Genome assembly (visualization)
437
GRCh38
399
hg19
Lab
439
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
13
inconsistent control read length
biosample_type!
in vitro differentiated cells
month_released!
August, 2017
organ_slims!
vasculature
BIOSAMPLE
ASSAY
523 results
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Clear Filters
ChIP-seq
DNase-seq
tissue
liver
50
2
brain
14
14
heart
18
muscle of arm
17
caudate nucleus
15
1
+ See 74 more…
primary cell
monocyte
84
hepatocyte
4
1
astrocyte of the cerebellum
2
1
cardiac fibroblast
3
glomerular visceral epithelial cell
2
+ See 13 more…
cell line
HepG2
59
iPSC derived cell line
2
Panc1
1
See all biosamples
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