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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
78
ChIP-seq
Assay category
196
DNA accessibility
78
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
other post-translational modification
Date released
187
June, 2019
63
November, 2017
14
August, 2017
November, 2018
9
October, 2019
1
November, 2020
Available data
2967
bam
2785
bigWig
1568
bed narrowPeak
1469
tsv
1082
fastq
908
bigBed narrowPeak
358
tagAlign
311
bed broadPeak
274
bigBed broadPeak
239
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
19
hic
16
bedpe bed3+
7
bed bed3
7
csv
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
274
Homo sapiens
Biosample type
167
tissue
58
cell line
49
primary cell
in vitro differentiated cells
Organ
78
kidney
59
liver
36
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
7
connective tissue
5
pancreas
4
artery
4
eye
4
vein
2
nerve
1
adipose tissue
Project
274
AMP
Genome assembly (visualization)
256
GRCh38
251
hg19
Lab
274
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
November, 2018
organ_slims!
blood
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
274 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 36 more…
cell line
HepG2
57
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
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