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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
DNase-seq
73
ChIP-seq
Assay category
173
DNA accessibility
73
DNA binding
Target of assay
46
transcription factor
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
6
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
157
June, 2019
58
November, 2017
14
August, 2017
9
October, 2019
7
November, 2018
1
November, 2020
Available data
2858
bam
2688
bigWig
1482
bed narrowPeak
1442
tsv
1196
fastq
898
bigBed narrowPeak
274
bed broadPeak
246
bigBed broadPeak
240
tagAlign
213
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
6
bed bed3
4
tar
3
cool
2
hdf5
1
bedpe
1
vcf
Organism
246
Homo sapiens
Biosample type
149
tissue
59
cell line
38
primary cell
in vitro differentiated cells
Organ
78
kidney
63
liver
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
246
AMP
Genome assembly (visualization)
233
hg19
228
GRCh38
Lab
246
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
organ_slims!
brain
small intestine
BIOSAMPLE
ASSAY
246 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
renal cortex interstitium
11
+ See 26 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
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