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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 787ChIP-seq
  • 208DNase-seq
  • 25ATAC-seq
  • 5FAIRE-seq
Assay category
  • 787DNA binding
  • 238DNA accessibility
Target of assay
  • 403transcription factor
  • 379histone
  • 379histone modification
  • 235broad histone mark
  • 144narrow histone mark
  • 91RNA binding protein
  • 81recombinant protein
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • 210June, 2019
  • 97May, 2019
  • 73November, 2018
  • 68October, 2019
  • 64April, 2019
  • 45October, 2018
  • 41August, 2017
  • 36December, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3101bam
  • 2910bigWig
  • 1685bed narrowPeak
  • 1469tsv
  • 1217fastq
  • 1025bigBed narrowPeak
  • 358tagAlign
  • 321bed broadPeak
  • 284bigBed broadPeak
  • 248bed bed3+
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 19hic
  • 16bedpe bed3+
  • 8csv
  • 7bed bed3
  • 5hdf5
  • 4tar
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1019Homo sapiens
Biosample type
  • 561tissue
  • 355cell line
  • 109primary cell
  • in vitro differentiated cells
Organ
  • 344liver
  • 127brain
  • 104kidney
  • 94heart
  • 91pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 62epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 26nerve
  • 25artery
  • 25connective tissue
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 1025AMP
Genome assembly (visualization)
  • 983GRCh38
  • 946hg19
Lab
  • 1025AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

1025 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
cell line
HepG2293
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
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