Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
222
total RNA-seq
178
ChIP-seq
134
single cell RNA-seq
27
snATAC-seq
17
WGBS
13
ATAC-seq
4
RRBS
1
GRO-seq
1
Hi-C
Assay category
356
Transcription
178
DNA binding
40
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Target of assay
133
control
27
transcription factor
18
histone
18
histone modification
11
narrow histone mark
7
broad histone mark
3
RNA binding protein
1
recombinant protein
Date released
155
August, 2017
76
February, 2023
69
November, 2017
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
29
October, 2018
27
September, 2018
15
November, 2018
December, 2017
9
January, 2019
7
August, 2020
6
May, 2022
6
September, 2017
5
December, 2018
5
October, 2017
3
August, 2018
3
June, 2018
1
January, 2018
1
March, 2019
Available data
3050
bam
2872
bigWig
bed narrowPeak
1469
tsv
1166
fastq
989
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
245
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
596
Homo sapiens
Biosample type
320
primary cell
196
tissue
80
cell line
in vitro differentiated cells
1
stem cell
Organ
326
pancreas
177
epithelium
84
liver
37
connective tissue
34
adipose tissue
10
spleen
7
brain
6
blood
6
bodily fluid
2
musculature of body
2
vasculature
1
blood vessel
Project
428
AMP
169
HPAP
Genome assembly (visualization)
286
hg19
279
GRCh38
1
hg18
Lab
420
AMP-T2D consortium
169
Klaus Kaestner, Upenn
6
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
7
inconsistent ontology term
Audit category:
35
missing controlled_by
Audit category:
2
inconsistent control read length
biosample_type!
in vitro differentiated cells
files.file_type!
bed narrowPeak
month_released!
December, 2017
BIOSAMPLE
ASSAY
597 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
RRBS
GRO-seq
Hi-C
primary cell
pancreatic alpha cell
52
6
12
6
7
Langerhans cell
34
27
pancreatic beta cell
21
6
12
3
exocrine cell
39
pancreatic acinar cell
4
9
+ See 18 more…
tissue
islet of Langerhans
97
16
6
2
white adipose tissue
12
body of pancreas
8
2
liver
8
1
1
spleen
8
2
+ See 7 more…
cell line
HepG2
5
67
1
1
GM12878
6
stem cell
hESC
1
See all biosamples
Download