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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
591
ChIP-seq
222
total RNA-seq
132
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
17
WGBS
11
DNase-seq
4
RRBS
2
FAIRE-seq
1
GRO-seq
1
Hi-C
Assay category
591
DNA binding
354
Transcription
101
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Target of assay
421
transcription factor
165
histone modification
164
histone
control
87
broad histone mark
83
RNA binding protein
82
recombinant protein
77
narrow histone mark
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
265
November, 2017
208
August, 2017
81
November, 2018
76
February, 2023
72
September, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
38
December, 2017
33
October, 2018
31
December, 2018
26
January, 2019
24
May, 2022
15
October, 2017
7
August, 2020
5
September, 2017
3
August, 2018
3
June, 2018
1
January, 2018
1
March, 2019
Available data
2887
bigWig
2825
bam
1685
bed narrowPeak
1466
tsv
1071
fastq
1025
bigBed narrowPeak
321
bed broadPeak
300
tagAlign
284
bigBed broadPeak
244
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
1063
Homo sapiens
Biosample type
391
primary cell
365
cell line
310
tissue
in vitro differentiated cells
3
stem cell
Organ
441
pancreas
374
liver
224
epithelium
54
blood
54
bodily fluid
27
connective tissue
24
adipose tissue
16
brain
16
spleen
4
vasculature
2
blood vessel
2
musculature of body
Project
900
AMP
169
HPAP
Genome assembly (visualization)
869
hg19
829
GRCh38
1
hg18
Lab
874
AMP-T2D consortium
169
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
27
audit script error
7
inconsistent ontology term
Audit category:
83
missing controlled_by
Audit category:
39
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
biosample_type!
in vitro differentiated cells
files.file_type!
csv
target.investigated_as!
control
BIOSAMPLE
ASSAY
1069 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
FAIRE-seq
GRO-seq
Hi-C
primary cell
pancreatic alpha cell
7
52
12
13
6
Langerhans cell
34
27
pancreatic beta cell
7
21
12
10
exocrine cell
39
pancreatic ductal cell
13
4
9
4
+ See 18 more…
cell line
HepG2
304
5
1
1
GM12878
54
tissue
islet of Langerhans
21
97
6
20
1
1
liver
50
1
2
1
body of pancreas
25
4
2
2
pancreas
13
2
1
spleen
12
1
2
1
+ See 8 more…
stem cell
hESC
2
1
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