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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
660
ChIP-seq
222
total RNA-seq
134
single cell RNA-seq
60
ATAC-seq
27
snATAC-seq
17
WGBS
11
DNase-seq
4
RRBS
2
FAIRE-seq
1
GRO-seq
1
Hi-C
Assay category
660
DNA binding
356
Transcription
100
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Target of assay
421
transcription factor
165
histone modification
164
histone
146
control
87
broad histone mark
83
RNA binding protein
82
recombinant protein
narrow histone mark
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
314
November, 2017
193
August, 2017
88
November, 2018
76
February, 2023
58
September, 2018
55
October, 2018
50
July, 2018
48
December, 2017
45
February, 2021
44
April, 2018
41
September, 2020
35
December, 2018
27
January, 2019
24
May, 2022
16
October, 2017
11
September, 2017
7
August, 2020
3
August, 2018
3
June, 2018
1
January, 2018
March, 2019
Available data
2736
bam
2510
bigWig
1469
tsv
1296
bed narrowPeak
1139
fastq
881
bigBed narrowPeak
291
bed broadPeak
270
bigBed broadPeak
239
bed bed3+
196
tagAlign
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
18
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
vcf
Organism
1134
Homo sapiens
Biosample type
419
cell line
369
primary cell
348
tissue
in vitro differentiated cells
3
stem cell
Organ
436
liver
422
pancreas
217
epithelium
59
blood
59
bodily fluid
45
connective tissue
42
adipose tissue
22
spleen
17
brain
4
vasculature
2
blood vessel
2
musculature of body
Project
970
AMP
169
HPAP
Genome assembly (visualization)
813
hg19
757
GRCh38
1
hg18
Lab
945
AMP-T2D consortium
169
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
27
audit script error
7
inconsistent ontology term
Audit category:
55
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
March, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
1139 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
FAIRE-seq
GRO-seq
Hi-C
cell line
HepG2
353
5
1
1
GM12878
59
primary cell
pancreatic alpha cell
9
52
12
13
6
Langerhans cell
34
27
pancreatic beta cell
9
21
12
10
exocrine cell
39
pancreatic ductal cell
6
4
9
4
+ See 18 more…
tissue
islet of Langerhans
20
97
6
19
1
1
liver
62
1
2
1
body of pancreas
28
4
2
2
spleen
18
1
2
1
pancreas
12
2
1
+ See 8 more…
stem cell
hESC
2
1
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