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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
609
ChIP-seq
220
total RNA-seq
133
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
10
WGBS
4
RRBS
2
DNase-seq
1
FAIRE-seq
1
GRO-seq
1
Hi-C
Assay category
609
DNA binding
353
Transcription
91
DNA accessibility
14
DNA methylation
1
3D chromatin structure
Target of assay
342
transcription factor
149
histone modification
148
histone
113
control
76
broad histone mark
72
narrow histone mark
66
recombinant protein
51
RNA binding protein
26
chromatin remodeller
2
other context
2
other post-translational modification
Date released
324
November, 2017
233
August, 2017
November, 2018
76
February, 2023
73
September, 2018
October, 2018
51
December, 2017
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
3
August, 2018
3
June, 2018
1
January, 2018
1
March, 2019
Available data
2938
bam
2783
bigWig
1567
bed narrowPeak
1467
tsv
1069
fastq
907
bigBed narrowPeak
358
tagAlign
312
bed broadPeak
275
bigBed broadPeak
239
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
19
hic
16
bedpe bed3+
7
bed bed3
7
csv
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
1062
Homo sapiens
Biosample type
406
primary cell
366
cell line
293
tissue
in vitro differentiated cells
4
stem cell
Organ
427
pancreas
397
liver
236
epithelium
45
blood
45
bodily fluid
22
connective tissue
19
adipose tissue
19
brain
15
spleen
6
vasculature
3
blood vessel
2
musculature of body
Project
900
AMP
169
HPAP
Genome assembly (visualization)
786
hg19
721
GRCh38
1
hg18
Lab
874
AMP-T2D consortium
169
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
27
audit script error
7
inconsistent ontology term
Audit category:
80
missing controlled_by
Audit category:
33
inconsistent control read length
5
inconsistent control run_type
3
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
November, 2018
October, 2018
BIOSAMPLE
ASSAY
1069 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
GRO-seq
Hi-C
primary cell
pancreatic alpha cell
13
52
12
13
6
Langerhans cell
34
27
pancreatic beta cell
13
21
12
10
exocrine cell
39
pancreatic ductal cell
13
4
9
4
+ See 18 more…
cell line
HepG2
315
5
1
GM12878
45
tissue
islet of Langerhans
28
97
6
20
1
1
liver
63
1
1
spleen
14
1
pancreas
14
white adipose tissue
12
+ See 8 more…
stem cell
hESC
3
1
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