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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
421
ChIP-seq
Assay category
421
DNA binding
Target of assay
421
transcription factor
165
histone modification
164
histone
146
control
87
broad histone mark
83
RNA binding protein
82
recombinant protein
77
narrow histone mark
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
244
November, 2017
64
November, 2018
31
December, 2017
28
December, 2018
25
August, 2017
15
October, 2018
14
January, 2019
Available data
459
bigWig
448
bam
437
bed narrowPeak
421
fastq
403
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
13
bed bed3+
5
tagAlign
3
tar
Organism
421
Homo sapiens
Biosample type
337
cell line
79
tissue
in vitro differentiated cells
5
primary cell
Organ
325
liver
51
blood
51
bodily fluid
17
adipose tissue
17
connective tissue
17
pancreas
6
spleen
3
brain
2
epithelium
2
vasculature
1
blood vessel
Project
421
AMP
Genome assembly (visualization)
412
hg19
379
GRCh38
Lab
421
AMP-T2D consortium
Audit category:
28
inconsistent control
Audit category:
30
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
biosample_type!
in vitro differentiated cells
organ_slims!
thymus
BIOSAMPLE
ASSAY
421 results
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Clear Filters
ChIP-seq
cell line
HepG2
286
GM12878
51
tissue
liver
37
white adipose tissue
12
body of pancreas
9
islet of Langerhans
7
spleen
6
+ See 4 more…
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
See all biosamples
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