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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
66
single cell RNA-seq
32
ATAC-seq
16
ChIP-seq
6
WGBS
Assay category
147
Transcription
32
DNA accessibility
16
DNA binding
6
DNA methylation
Target of assay
histone
37
histone modification
21
narrow histone mark
16
broad histone mark
14
control
2
RNA binding protein
2
transcription factor
Date released
40
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
19
September, 2020
15
August, 2017
7
August, 2020
6
February, 2021
5
September, 2017
4
November, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
215
bam
206
bigWig
201
fastq
154
tsv
80
zippedFastqFolder
60
bed narrowPeak
45
bigBed narrowPeak
18
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tagAlign
1
tar
Organism
201
Homo sapiens
Biosample type
201
primary cell
in vitro differentiated cells
Organ
418
liver
371
pancreas
201
epithelium
59
blood
59
bodily fluid
45
connective tissue
42
adipose tissue
18
spleen
11
brain
4
vasculature
2
blood vessel
2
musculature of body
Project
132
AMP
69
HPAP
Genome assembly (visualization)
128
GRCh38
120
hg19
Lab
132
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
1
inconsistent ontology term
biosample_type!
in vitro differentiated cells
organ_slims!
thymus
target.investigated_as!
histone
BIOSAMPLE
ASSAY
201 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
primary cell
pancreatic alpha cell
52
12
13
6
6
pancreatic beta cell
21
12
10
6
pancreatic acinar cell
4
9
5
pancreatic ductal cell
4
9
4
pancreatic delta cell
11
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